A multi-omics approach reveals function of Secretory Carrier-Associated Membrane Proteins in wood formation of Populus trees.
Identifieur interne : 001075 ( Main/Exploration ); précédent : 001074; suivant : 001076A multi-omics approach reveals function of Secretory Carrier-Associated Membrane Proteins in wood formation of Populus trees.
Auteurs : Ogonna Obudulu [Suède] ; Niklas M Hler [Suède, Norvège] ; Tomas Skotare [Suède] ; Joakim Bygdell [Suède] ; Ilka N. Abreu [Suède] ; Maria Ahnlund [Suède] ; Madhavi Latha Gandla [Suède] ; Anna Petterle [Suède] ; Thomas Moritz [Suède] ; Torgeir R. Hvidsten [Suède, Norvège] ; Leif J. Jönsson [Suède] ; Gunnar Wingsle [Suède] ; Johan Trygg [Suède] ; Hannele Tuominen [Suède]Source :
- BMC genomics [ 1471-2164 ] ; 2018.
Descripteurs français
- KwdFr :
- Analyse de profil d'expression de gènes (MeSH), Arbres (MeSH), Bois (génétique), Bois (métabolisme), Famille multigénique (MeSH), Métabolome (MeSH), Métabolomique (MeSH), Oses (métabolisme), Paroi cellulaire (métabolisme), Phénols (métabolisme), Populus (génétique), Populus (métabolisme), Protéines membranaires (génétique), Protéines membranaires (métabolisme), Protéines membranaires (physiologie), Protéines végétales (génétique), Protéines végétales (métabolisme), Protéines végétales (physiologie), Protéomique (MeSH), Voies de biosynthèse (génétique), Xylème (métabolisme).
- MESH :
- génétique : Bois, Populus, Protéines membranaires, Protéines végétales, Voies de biosynthèse.
- métabolisme : Bois, Oses, Paroi cellulaire, Phénols, Populus, Protéines membranaires, Protéines végétales, Xylème.
- physiologie : Protéines membranaires, Protéines végétales.
- Analyse de profil d'expression de gènes, Arbres, Famille multigénique, Métabolome, Métabolomique, Protéomique.
English descriptors
- KwdEn :
- Biosynthetic Pathways (genetics), Cell Wall (metabolism), Gene Expression Profiling (MeSH), Membrane Proteins (genetics), Membrane Proteins (metabolism), Membrane Proteins (physiology), Metabolome (MeSH), Metabolomics (MeSH), Monosaccharides (metabolism), Multigene Family (MeSH), Phenols (metabolism), Plant Proteins (genetics), Plant Proteins (metabolism), Plant Proteins (physiology), Populus (genetics), Populus (metabolism), Proteomics (MeSH), Trees (MeSH), Wood (genetics), Wood (metabolism), Xylem (metabolism).
- MESH :
- chemical , genetics : Membrane Proteins, Plant Proteins.
- genetics : Biosynthetic Pathways, Populus, Wood.
- metabolism : Cell Wall, Membrane Proteins, Monosaccharides, Phenols, Plant Proteins, Populus, Wood, Xylem.
- chemical , physiology : Membrane Proteins, Plant Proteins.
- Gene Expression Profiling, Metabolome, Metabolomics, Multigene Family, Proteomics, Trees.
Abstract
BACKGROUND
Secretory Carrier-Associated Membrane Proteins (SCAMPs) are highly conserved 32-38 kDa proteins that are involved in membrane trafficking. A systems approach was taken to elucidate function of SCAMPs in wood formation of Populus trees. Phenotypic and multi-omics analyses were performed in woody tissues of transgenic Populus trees carrying an RNAi construct for Populus tremula x tremuloides SCAMP3 (PttSCAMP3; Potri.019G104000).
RESULTS
The woody tissues of the transgenic trees displayed increased amounts of both polysaccharides and lignin oligomers, indicating increased deposition of both the carbohydrate and lignin components of the secondary cell walls. This coincided with a tendency towards increased wood density as well as significantly increased thickness of the suberized cork in the transgenic lines. Multivariate OnPLS (orthogonal projections to latent structures) modeling of five different omics datasets (the transcriptome, proteome, GC-MS metabolome, LC-MS metabolome and pyrolysis-GC/MS metabolome) collected from the secondary xylem tissues of the stem revealed systemic variation in the different variables in the transgenic lines, including changes that correlated with the changes in the secondary cell wall composition. The OnPLS model also identified a rather large number of proteins that were more abundant in the transgenic lines than in the wild type. Several of these were related to secretion and/or endocytosis as well as both primary and secondary cell wall biosynthesis.
CONCLUSIONS
Populus SCAMP proteins were shown to influence accumulation of secondary cell wall components, including polysaccharides and phenolic compounds, in the woody tissues of Populus tree stems. Our multi-omics analyses combined with the OnPLS modelling suggest that this function is mediated by changes in membrane trafficking to fine-tune the abundance of cell wall precursors and/or proteins involved in cell wall biosynthesis and transport. The data provides a multi-level source of information for future studies on the function of the SCAMP proteins in plant stem tissues.
DOI: 10.1186/s12864-017-4411-1
PubMed: 29298676
PubMed Central: PMC5753437
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">A multi-omics approach reveals function of Secretory Carrier-Associated Membrane Proteins in wood formation of Populus trees.</title><author><name sortKey="Obudulu, Ogonna" sort="Obudulu, Ogonna" uniqKey="Obudulu O" first="Ogonna" last="Obudulu">Ogonna Obudulu</name><affiliation wicri:level="1"><nlm:affiliation>Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, 90183, Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, 90183, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Computational life science cluster (CLiC), Department of Chemistry, Umeå University, Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Computational life science cluster (CLiC), Department of Chemistry, Umeå University, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Present address: Department of Microbiology and Immunology, Institute of Biomedicine, University of Gothenburg, 40530, Gothenburg, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Present address: Department of Microbiology and Immunology, Institute of Biomedicine, University of Gothenburg, 40530, Gothenburg</wicri:regionArea><wicri:noRegion>Gothenburg</wicri:noRegion></affiliation></author><author><name sortKey="M Hler, Niklas" sort="M Hler, Niklas" uniqKey="M Hler N" first="Niklas" last="M Hler">Niklas M Hler</name><affiliation wicri:level="1"><nlm:affiliation>Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, 90187, Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, 90187, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Faculty of Chemistry, Biotechnology and Food Science, Norwegian, University of Life Sciences, 1432, Ås, Norway.</nlm:affiliation><country xml:lang="fr">Norvège</country><wicri:regionArea>Faculty of Chemistry, Biotechnology and Food Science, Norwegian, University of Life Sciences, 1432, Ås</wicri:regionArea><wicri:noRegion>Ås</wicri:noRegion></affiliation></author><author><name sortKey="Skotare, Tomas" sort="Skotare, Tomas" uniqKey="Skotare T" first="Tomas" last="Skotare">Tomas Skotare</name><affiliation wicri:level="1"><nlm:affiliation>Department of Chemistry, Umeå University, 90187, Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Department of Chemistry, Umeå University, 90187, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Computational life science cluster (CLiC), Department of Chemistry, Umeå University, Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Computational life science cluster (CLiC), Department of Chemistry, Umeå University, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation></author><author><name sortKey="Bygdell, Joakim" sort="Bygdell, Joakim" uniqKey="Bygdell J" first="Joakim" last="Bygdell">Joakim Bygdell</name><affiliation wicri:level="1"><nlm:affiliation>Department of Chemistry, Umeå University, 90187, Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Department of Chemistry, Umeå University, 90187, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Computational life science cluster (CLiC), Department of Chemistry, Umeå University, Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Computational life science cluster (CLiC), Department of Chemistry, Umeå University, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation></author><author><name sortKey="Abreu, Ilka N" sort="Abreu, Ilka N" uniqKey="Abreu I" first="Ilka N" last="Abreu">Ilka N. Abreu</name><affiliation wicri:level="1"><nlm:affiliation>Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, 90183, Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, 90183, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation></author><author><name sortKey="Ahnlund, Maria" sort="Ahnlund, Maria" uniqKey="Ahnlund M" first="Maria" last="Ahnlund">Maria Ahnlund</name><affiliation wicri:level="1"><nlm:affiliation>Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, 90183, Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, 90183, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation></author><author><name sortKey="Latha Gandla, Madhavi" sort="Latha Gandla, Madhavi" uniqKey="Latha Gandla M" first="Madhavi" last="Latha Gandla">Madhavi Latha Gandla</name><affiliation wicri:level="1"><nlm:affiliation>Department of Chemistry, Umeå University, 90187, Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Department of Chemistry, Umeå University, 90187, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation></author><author><name sortKey="Petterle, Anna" sort="Petterle, Anna" uniqKey="Petterle A" first="Anna" last="Petterle">Anna Petterle</name><affiliation wicri:level="1"><nlm:affiliation>Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, 90187, Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, 90187, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation></author><author><name sortKey="Moritz, Thomas" sort="Moritz, Thomas" uniqKey="Moritz T" first="Thomas" last="Moritz">Thomas Moritz</name><affiliation wicri:level="1"><nlm:affiliation>Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, 90183, Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, 90183, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation></author><author><name sortKey="Hvidsten, Torgeir R" sort="Hvidsten, Torgeir R" uniqKey="Hvidsten T" first="Torgeir R" last="Hvidsten">Torgeir R. Hvidsten</name><affiliation wicri:level="1"><nlm:affiliation>Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, 90187, Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, 90187, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Faculty of Chemistry, Biotechnology and Food Science, Norwegian, University of Life Sciences, 1432, Ås, Norway.</nlm:affiliation><country xml:lang="fr">Norvège</country><wicri:regionArea>Faculty of Chemistry, Biotechnology and Food Science, Norwegian, University of Life Sciences, 1432, Ås</wicri:regionArea><wicri:noRegion>Ås</wicri:noRegion></affiliation></author><author><name sortKey="Jonsson, Leif J" sort="Jonsson, Leif J" uniqKey="Jonsson L" first="Leif J" last="Jönsson">Leif J. Jönsson</name><affiliation wicri:level="1"><nlm:affiliation>Department of Chemistry, Umeå University, 90187, Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Department of Chemistry, Umeå University, 90187, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation></author><author><name sortKey="Wingsle, Gunnar" sort="Wingsle, Gunnar" uniqKey="Wingsle G" first="Gunnar" last="Wingsle">Gunnar Wingsle</name><affiliation wicri:level="1"><nlm:affiliation>Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, 90183, Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, 90183, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation></author><author><name sortKey="Trygg, Johan" sort="Trygg, Johan" uniqKey="Trygg J" first="Johan" last="Trygg">Johan Trygg</name><affiliation wicri:level="1"><nlm:affiliation>Department of Chemistry, Umeå University, 90187, Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Department of Chemistry, Umeå University, 90187, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Computational life science cluster (CLiC), Department of Chemistry, Umeå University, Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Computational life science cluster (CLiC), Department of Chemistry, Umeå University, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation></author><author><name sortKey="Tuominen, Hannele" sort="Tuominen, Hannele" uniqKey="Tuominen H" first="Hannele" last="Tuominen">Hannele Tuominen</name><affiliation wicri:level="1"><nlm:affiliation>Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, 90187, Umeå, Sweden. hannele.tuominen@umu.se.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, 90187, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2018">2018</date><idno type="RBID">pubmed:29298676</idno><idno type="pmid">29298676</idno><idno type="doi">10.1186/s12864-017-4411-1</idno><idno type="pmc">PMC5753437</idno><idno type="wicri:Area/Main/Corpus">001018</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">001018</idno><idno type="wicri:Area/Main/Curation">001018</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">001018</idno><idno type="wicri:Area/Main/Exploration">001018</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">A multi-omics approach reveals function of Secretory Carrier-Associated Membrane Proteins in wood formation of Populus trees.</title><author><name sortKey="Obudulu, Ogonna" sort="Obudulu, Ogonna" uniqKey="Obudulu O" first="Ogonna" last="Obudulu">Ogonna Obudulu</name><affiliation wicri:level="1"><nlm:affiliation>Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, 90183, Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, 90183, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Computational life science cluster (CLiC), Department of Chemistry, Umeå University, Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Computational life science cluster (CLiC), Department of Chemistry, Umeå University, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Present address: Department of Microbiology and Immunology, Institute of Biomedicine, University of Gothenburg, 40530, Gothenburg, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Present address: Department of Microbiology and Immunology, Institute of Biomedicine, University of Gothenburg, 40530, Gothenburg</wicri:regionArea><wicri:noRegion>Gothenburg</wicri:noRegion></affiliation></author><author><name sortKey="M Hler, Niklas" sort="M Hler, Niklas" uniqKey="M Hler N" first="Niklas" last="M Hler">Niklas M Hler</name><affiliation wicri:level="1"><nlm:affiliation>Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, 90187, Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, 90187, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Faculty of Chemistry, Biotechnology and Food Science, Norwegian, University of Life Sciences, 1432, Ås, Norway.</nlm:affiliation><country xml:lang="fr">Norvège</country><wicri:regionArea>Faculty of Chemistry, Biotechnology and Food Science, Norwegian, University of Life Sciences, 1432, Ås</wicri:regionArea><wicri:noRegion>Ås</wicri:noRegion></affiliation></author><author><name sortKey="Skotare, Tomas" sort="Skotare, Tomas" uniqKey="Skotare T" first="Tomas" last="Skotare">Tomas Skotare</name><affiliation wicri:level="1"><nlm:affiliation>Department of Chemistry, Umeå University, 90187, Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Department of Chemistry, Umeå University, 90187, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Computational life science cluster (CLiC), Department of Chemistry, Umeå University, Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Computational life science cluster (CLiC), Department of Chemistry, Umeå University, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation></author><author><name sortKey="Bygdell, Joakim" sort="Bygdell, Joakim" uniqKey="Bygdell J" first="Joakim" last="Bygdell">Joakim Bygdell</name><affiliation wicri:level="1"><nlm:affiliation>Department of Chemistry, Umeå University, 90187, Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Department of Chemistry, Umeå University, 90187, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Computational life science cluster (CLiC), Department of Chemistry, Umeå University, Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Computational life science cluster (CLiC), Department of Chemistry, Umeå University, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation></author><author><name sortKey="Abreu, Ilka N" sort="Abreu, Ilka N" uniqKey="Abreu I" first="Ilka N" last="Abreu">Ilka N. Abreu</name><affiliation wicri:level="1"><nlm:affiliation>Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, 90183, Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, 90183, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation></author><author><name sortKey="Ahnlund, Maria" sort="Ahnlund, Maria" uniqKey="Ahnlund M" first="Maria" last="Ahnlund">Maria Ahnlund</name><affiliation wicri:level="1"><nlm:affiliation>Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, 90183, Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, 90183, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation></author><author><name sortKey="Latha Gandla, Madhavi" sort="Latha Gandla, Madhavi" uniqKey="Latha Gandla M" first="Madhavi" last="Latha Gandla">Madhavi Latha Gandla</name><affiliation wicri:level="1"><nlm:affiliation>Department of Chemistry, Umeå University, 90187, Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Department of Chemistry, Umeå University, 90187, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation></author><author><name sortKey="Petterle, Anna" sort="Petterle, Anna" uniqKey="Petterle A" first="Anna" last="Petterle">Anna Petterle</name><affiliation wicri:level="1"><nlm:affiliation>Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, 90187, Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, 90187, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation></author><author><name sortKey="Moritz, Thomas" sort="Moritz, Thomas" uniqKey="Moritz T" first="Thomas" last="Moritz">Thomas Moritz</name><affiliation wicri:level="1"><nlm:affiliation>Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, 90183, Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, 90183, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation></author><author><name sortKey="Hvidsten, Torgeir R" sort="Hvidsten, Torgeir R" uniqKey="Hvidsten T" first="Torgeir R" last="Hvidsten">Torgeir R. Hvidsten</name><affiliation wicri:level="1"><nlm:affiliation>Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, 90187, Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, 90187, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Faculty of Chemistry, Biotechnology and Food Science, Norwegian, University of Life Sciences, 1432, Ås, Norway.</nlm:affiliation><country xml:lang="fr">Norvège</country><wicri:regionArea>Faculty of Chemistry, Biotechnology and Food Science, Norwegian, University of Life Sciences, 1432, Ås</wicri:regionArea><wicri:noRegion>Ås</wicri:noRegion></affiliation></author><author><name sortKey="Jonsson, Leif J" sort="Jonsson, Leif J" uniqKey="Jonsson L" first="Leif J" last="Jönsson">Leif J. Jönsson</name><affiliation wicri:level="1"><nlm:affiliation>Department of Chemistry, Umeå University, 90187, Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Department of Chemistry, Umeå University, 90187, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation></author><author><name sortKey="Wingsle, Gunnar" sort="Wingsle, Gunnar" uniqKey="Wingsle G" first="Gunnar" last="Wingsle">Gunnar Wingsle</name><affiliation wicri:level="1"><nlm:affiliation>Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, 90183, Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, 90183, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation></author><author><name sortKey="Trygg, Johan" sort="Trygg, Johan" uniqKey="Trygg J" first="Johan" last="Trygg">Johan Trygg</name><affiliation wicri:level="1"><nlm:affiliation>Department of Chemistry, Umeå University, 90187, Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Department of Chemistry, Umeå University, 90187, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Computational life science cluster (CLiC), Department of Chemistry, Umeå University, Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Computational life science cluster (CLiC), Department of Chemistry, Umeå University, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation></author><author><name sortKey="Tuominen, Hannele" sort="Tuominen, Hannele" uniqKey="Tuominen H" first="Hannele" last="Tuominen">Hannele Tuominen</name><affiliation wicri:level="1"><nlm:affiliation>Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, 90187, Umeå, Sweden. hannele.tuominen@umu.se.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, 90187, Umeå</wicri:regionArea><wicri:noRegion>Umeå</wicri:noRegion></affiliation></author></analytic><series><title level="j">BMC genomics</title><idno type="eISSN">1471-2164</idno><imprint><date when="2018" type="published">2018</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Biosynthetic Pathways (genetics)</term><term>Cell Wall (metabolism)</term><term>Gene Expression Profiling (MeSH)</term><term>Membrane Proteins (genetics)</term><term>Membrane Proteins (metabolism)</term><term>Membrane Proteins (physiology)</term><term>Metabolome (MeSH)</term><term>Metabolomics (MeSH)</term><term>Monosaccharides (metabolism)</term><term>Multigene Family (MeSH)</term><term>Phenols (metabolism)</term><term>Plant Proteins (genetics)</term><term>Plant Proteins (metabolism)</term><term>Plant Proteins (physiology)</term><term>Populus (genetics)</term><term>Populus (metabolism)</term><term>Proteomics (MeSH)</term><term>Trees (MeSH)</term><term>Wood (genetics)</term><term>Wood (metabolism)</term><term>Xylem (metabolism)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de profil d'expression de gènes (MeSH)</term><term>Arbres (MeSH)</term><term>Bois (génétique)</term><term>Bois (métabolisme)</term><term>Famille multigénique (MeSH)</term><term>Métabolome (MeSH)</term><term>Métabolomique (MeSH)</term><term>Oses (métabolisme)</term><term>Paroi cellulaire (métabolisme)</term><term>Phénols (métabolisme)</term><term>Populus (génétique)</term><term>Populus (métabolisme)</term><term>Protéines membranaires (génétique)</term><term>Protéines membranaires (métabolisme)</term><term>Protéines membranaires (physiologie)</term><term>Protéines végétales (génétique)</term><term>Protéines végétales (métabolisme)</term><term>Protéines végétales (physiologie)</term><term>Protéomique (MeSH)</term><term>Voies de biosynthèse (génétique)</term><term>Xylème (métabolisme)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Membrane Proteins</term><term>Plant Proteins</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Biosynthetic Pathways</term><term>Populus</term><term>Wood</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Bois</term><term>Populus</term><term>Protéines membranaires</term><term>Protéines végétales</term><term>Voies de biosynthèse</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Cell Wall</term><term>Membrane Proteins</term><term>Monosaccharides</term><term>Phenols</term><term>Plant Proteins</term><term>Populus</term><term>Wood</term><term>Xylem</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Bois</term><term>Oses</term><term>Paroi cellulaire</term><term>Phénols</term><term>Populus</term><term>Protéines membranaires</term><term>Protéines végétales</term><term>Xylème</term></keywords><keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Protéines membranaires</term><term>Protéines végétales</term></keywords><keywords scheme="MESH" type="chemical" qualifier="physiology" xml:lang="en"><term>Membrane Proteins</term><term>Plant Proteins</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Gene Expression Profiling</term><term>Metabolome</term><term>Metabolomics</term><term>Multigene Family</term><term>Proteomics</term><term>Trees</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de profil d'expression de gènes</term><term>Arbres</term><term>Famille multigénique</term><term>Métabolome</term><term>Métabolomique</term><term>Protéomique</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><b>BACKGROUND</b></p><p>Secretory Carrier-Associated Membrane Proteins (SCAMPs) are highly conserved 32-38 kDa proteins that are involved in membrane trafficking. A systems approach was taken to elucidate function of SCAMPs in wood formation of Populus trees. Phenotypic and multi-omics analyses were performed in woody tissues of transgenic Populus trees carrying an RNAi construct for Populus tremula x tremuloides SCAMP3 (PttSCAMP3; Potri.019G104000).</p></div><div type="abstract" xml:lang="en"><p><b>RESULTS</b></p><p>The woody tissues of the transgenic trees displayed increased amounts of both polysaccharides and lignin oligomers, indicating increased deposition of both the carbohydrate and lignin components of the secondary cell walls. This coincided with a tendency towards increased wood density as well as significantly increased thickness of the suberized cork in the transgenic lines. Multivariate OnPLS (orthogonal projections to latent structures) modeling of five different omics datasets (the transcriptome, proteome, GC-MS metabolome, LC-MS metabolome and pyrolysis-GC/MS metabolome) collected from the secondary xylem tissues of the stem revealed systemic variation in the different variables in the transgenic lines, including changes that correlated with the changes in the secondary cell wall composition. The OnPLS model also identified a rather large number of proteins that were more abundant in the transgenic lines than in the wild type. Several of these were related to secretion and/or endocytosis as well as both primary and secondary cell wall biosynthesis.</p></div><div type="abstract" xml:lang="en"><p><b>CONCLUSIONS</b></p><p>Populus SCAMP proteins were shown to influence accumulation of secondary cell wall components, including polysaccharides and phenolic compounds, in the woody tissues of Populus tree stems. Our multi-omics analyses combined with the OnPLS modelling suggest that this function is mediated by changes in membrane trafficking to fine-tune the abundance of cell wall precursors and/or proteins involved in cell wall biosynthesis and transport. The data provides a multi-level source of information for future studies on the function of the SCAMP proteins in plant stem tissues.</p></div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">29298676</PMID><DateCompleted><Year>2018</Year><Month>07</Month><Day>06</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1471-2164</ISSN><JournalIssue CitedMedium="Internet"><Volume>19</Volume><Issue>1</Issue><PubDate><Year>2018</Year><Month>01</Month><Day>03</Day></PubDate></JournalIssue><Title>BMC genomics</Title><ISOAbbreviation>BMC Genomics</ISOAbbreviation></Journal><ArticleTitle>A multi-omics approach reveals function of Secretory Carrier-Associated Membrane Proteins in wood formation of Populus trees.</ArticleTitle><Pagination><MedlinePgn>11</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1186/s12864-017-4411-1</ELocationID><Abstract><AbstractText Label="BACKGROUND">Secretory Carrier-Associated Membrane Proteins (SCAMPs) are highly conserved 32-38 kDa proteins that are involved in membrane trafficking. A systems approach was taken to elucidate function of SCAMPs in wood formation of Populus trees. Phenotypic and multi-omics analyses were performed in woody tissues of transgenic Populus trees carrying an RNAi construct for Populus tremula x tremuloides SCAMP3 (PttSCAMP3; Potri.019G104000).</AbstractText><AbstractText Label="RESULTS">The woody tissues of the transgenic trees displayed increased amounts of both polysaccharides and lignin oligomers, indicating increased deposition of both the carbohydrate and lignin components of the secondary cell walls. This coincided with a tendency towards increased wood density as well as significantly increased thickness of the suberized cork in the transgenic lines. Multivariate OnPLS (orthogonal projections to latent structures) modeling of five different omics datasets (the transcriptome, proteome, GC-MS metabolome, LC-MS metabolome and pyrolysis-GC/MS metabolome) collected from the secondary xylem tissues of the stem revealed systemic variation in the different variables in the transgenic lines, including changes that correlated with the changes in the secondary cell wall composition. The OnPLS model also identified a rather large number of proteins that were more abundant in the transgenic lines than in the wild type. Several of these were related to secretion and/or endocytosis as well as both primary and secondary cell wall biosynthesis.</AbstractText><AbstractText Label="CONCLUSIONS">Populus SCAMP proteins were shown to influence accumulation of secondary cell wall components, including polysaccharides and phenolic compounds, in the woody tissues of Populus tree stems. Our multi-omics analyses combined with the OnPLS modelling suggest that this function is mediated by changes in membrane trafficking to fine-tune the abundance of cell wall precursors and/or proteins involved in cell wall biosynthesis and transport. The data provides a multi-level source of information for future studies on the function of the SCAMP proteins in plant stem tissues.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Obudulu</LastName><ForeName>Ogonna</ForeName><Initials>O</Initials><AffiliationInfo><Affiliation>Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, 90183, Umeå, Sweden.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Computational life science cluster (CLiC), Department of Chemistry, Umeå University, Umeå, Sweden.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Present address: Department of Microbiology and Immunology, Institute of Biomedicine, University of Gothenburg, 40530, Gothenburg, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Mähler</LastName><ForeName>Niklas</ForeName><Initials>N</Initials><AffiliationInfo><Affiliation>Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, 90187, Umeå, Sweden.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Faculty of Chemistry, Biotechnology and Food Science, Norwegian, University of Life Sciences, 1432, Ås, Norway.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Skotare</LastName><ForeName>Tomas</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Department of Chemistry, Umeå University, 90187, Umeå, Sweden.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Computational life science cluster (CLiC), Department of Chemistry, Umeå University, Umeå, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bygdell</LastName><ForeName>Joakim</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Department of Chemistry, Umeå University, 90187, Umeå, Sweden.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Computational life science cluster (CLiC), Department of Chemistry, Umeå University, Umeå, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Abreu</LastName><ForeName>Ilka N</ForeName><Initials>IN</Initials><AffiliationInfo><Affiliation>Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, 90183, Umeå, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ahnlund</LastName><ForeName>Maria</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, 90183, Umeå, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Latha Gandla</LastName><ForeName>Madhavi</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Department of Chemistry, Umeå University, 90187, Umeå, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Petterle</LastName><ForeName>Anna</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, 90187, Umeå, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Moritz</LastName><ForeName>Thomas</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, 90183, Umeå, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hvidsten</LastName><ForeName>Torgeir R</ForeName><Initials>TR</Initials><AffiliationInfo><Affiliation>Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, 90187, Umeå, Sweden.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Faculty of Chemistry, Biotechnology and Food Science, Norwegian, University of Life Sciences, 1432, Ås, Norway.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jönsson</LastName><ForeName>Leif J</ForeName><Initials>LJ</Initials><AffiliationInfo><Affiliation>Department of Chemistry, Umeå University, 90187, Umeå, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wingsle</LastName><ForeName>Gunnar</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, 90183, Umeå, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Trygg</LastName><ForeName>Johan</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Department of Chemistry, Umeå University, 90187, Umeå, Sweden.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Computational life science cluster (CLiC), Department of Chemistry, Umeå University, Umeå, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Tuominen</LastName><ForeName>Hannele</ForeName><Initials>H</Initials><Identifier Source="ORCID">0000-0002-4949-3702</Identifier><AffiliationInfo><Affiliation>Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, 90187, Umeå, Sweden. hannele.tuominen@umu.se.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><GrantList CompleteYN="Y"><Grant><GrantID>232-2009-1698</GrantID><Agency>Svenska Forskningsrådet Formas</Agency><Country>International</Country></Grant><Grant><GrantID>RBP14-0011</GrantID><Agency>Stiftelsen för Strategisk Forskning</Agency><Country>International</Country></Grant><Grant><GrantID>2015-02290</GrantID><Agency>VINNOVA (SE)</Agency><Country>International</Country></Grant><Grant><GrantID>SMK-1443</GrantID><Agency>Kempestiftelserna</Agency><Country>International</Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2018</Year><Month>01</Month><Day>03</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>BMC Genomics</MedlineTA><NlmUniqueID>100965258</NlmUniqueID><ISSNLinking>1471-2164</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D008565">Membrane Proteins</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D009005">Monosaccharides</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010636">Phenols</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010940">Plant Proteins</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D053898" MajorTopicYN="N">Biosynthetic Pathways</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D002473" MajorTopicYN="N">Cell Wall</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020869" MajorTopicYN="N">Gene Expression Profiling</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008565" MajorTopicYN="N">Membrane Proteins</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName><QualifierName UI="Q000502" MajorTopicYN="Y">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D055442" MajorTopicYN="N">Metabolome</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D055432" MajorTopicYN="N">Metabolomics</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D009005" MajorTopicYN="N">Monosaccharides</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005810" MajorTopicYN="N">Multigene Family</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010636" MajorTopicYN="N">Phenols</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010940" MajorTopicYN="N">Plant Proteins</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName><QualifierName UI="Q000502" MajorTopicYN="Y">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D040901" MajorTopicYN="N">Proteomics</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014197" MajorTopicYN="N">Trees</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014934" MajorTopicYN="N">Wood</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D052584" MajorTopicYN="N">Xylem</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="Y">Biomass</Keyword><Keyword MajorTopicYN="Y">Bioprocessing</Keyword><Keyword MajorTopicYN="Y">Cork</Keyword><Keyword MajorTopicYN="Y">Multi-omics</Keyword><Keyword MajorTopicYN="Y">Populus</Keyword><Keyword MajorTopicYN="Y">Secretory Carrier-Associated Membrane Protein (SCAMP)</Keyword><Keyword MajorTopicYN="Y">Wood chemistry</Keyword><Keyword MajorTopicYN="Y">Wood density</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2017</Year><Month>06</Month><Day>30</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2017</Year><Month>12</Month><Day>21</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2018</Year><Month>1</Month><Day>5</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2018</Year><Month>1</Month><Day>5</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2018</Year><Month>7</Month><Day>7</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">29298676</ArticleId><ArticleId IdType="doi">10.1186/s12864-017-4411-1</ArticleId><ArticleId IdType="pii">10.1186/s12864-017-4411-1</ArticleId><ArticleId IdType="pmc">PMC5753437</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Bioinformatics. 2015 Jan 15;31(2):166-9</Citation><ArticleIdList><ArticleId IdType="pubmed">25260700</ArticleId></ArticleIdList></Reference><Reference><Citation>Phytochemistry. 2015 Apr;112:210-20</Citation><ArticleIdList><ArticleId IdType="pubmed">24997793</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Plant Biol. 2011 Jan 10;11:7</Citation><ArticleIdList><ArticleId IdType="pubmed">21219654</ArticleId></ArticleIdList></Reference><Reference><Citation>J Proteome Res. 2010 Nov 5;9(11):5859-67</Citation><ArticleIdList><ArticleId IdType="pubmed">20853910</ArticleId></ArticleIdList></Reference><Reference><Citation>Electrophoresis. 2014 Jun;35(11):1599-606</Citation><ArticleIdList><ArticleId IdType="pubmed">24616048</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Biol Evol. 2001 May;18(5):691-9</Citation><ArticleIdList><ArticleId IdType="pubmed">11319253</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Physiol. 2004 Nov;136(3):3537-49</Citation><ArticleIdList><ArticleId IdType="pubmed">15516504</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Biol. 2002 Jun 18;3(7):RESEARCH0034</Citation><ArticleIdList><ArticleId IdType="pubmed">12184808</ArticleId></ArticleIdList></Reference><Reference><Citation>Theor Appl Genet. 1999 Aug;99(3-4):705-10</Citation><ArticleIdList><ArticleId IdType="pubmed">22665208</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell. 2007 Jan;19(1):296-319</Citation><ArticleIdList><ArticleId IdType="pubmed">17209124</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Physiol. 2009 Sep;151(1):78-87</Citation><ArticleIdList><ArticleId IdType="pubmed">19641030</ArticleId></ArticleIdList></Reference><Reference><Citation>J Proteome Res. 2009 Nov;8(11):5060-8</Citation><ArticleIdList><ArticleId IdType="pubmed">19754154</ArticleId></ArticleIdList></Reference><Reference><Citation>Curr Opin Biotechnol. 2013 Apr;24(2):336-43</Citation><ArticleIdList><ArticleId IdType="pubmed">23228388</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell. 2017 Jul;29(7):1585-1604</Citation><ArticleIdList><ArticleId IdType="pubmed">28655750</ArticleId></ArticleIdList></Reference><Reference><Citation>Annu Rev Plant Biol. 2008;59:683-707</Citation><ArticleIdList><ArticleId IdType="pubmed">18251711</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2010 Dec 28;107(52):22728-33</Citation><ArticleIdList><ArticleId IdType="pubmed">21149736</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2013 Jan 1;29(1):15-21</Citation><ArticleIdList><ArticleId IdType="pubmed">23104886</ArticleId></ArticleIdList></Reference><Reference><Citation>Anal Chem. 2005 Sep 1;77(17):5635-42</Citation><ArticleIdList><ArticleId IdType="pubmed">16131076</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell Environ. 2011 Apr;34(4):655-68</Citation><ArticleIdList><ArticleId IdType="pubmed">21309794</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant J. 2010 Mar;61(5):826-38</Citation><ArticleIdList><ArticleId IdType="pubmed">20030753</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Genomics. 2013 Dec 17;14:893</Citation><ArticleIdList><ArticleId IdType="pubmed">24341908</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2009 Aug 4;106(31):13118-23</Citation><ArticleIdList><ArticleId IdType="pubmed">19625620</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2014 Jan;42(Database issue):D26-31</Citation><ArticleIdList><ArticleId IdType="pubmed">24225321</ArticleId></ArticleIdList></Reference><Reference><Citation>Curr Genomics. 2016 Aug;17 (4):295-6</Citation><ArticleIdList><ArticleId IdType="pubmed">27499678</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Genomics. 2016 Feb 18;17 :119</Citation><ArticleIdList><ArticleId IdType="pubmed">26887814</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2012 Jan;40(Database issue):D1178-86</Citation><ArticleIdList><ArticleId IdType="pubmed">22110026</ArticleId></ArticleIdList></Reference><Reference><Citation>Anal Chem. 2008 Jan 1;80(1):115-22</Citation><ArticleIdList><ArticleId IdType="pubmed">18027910</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Physiol. 2009 Jan;149(1):370-83</Citation><ArticleIdList><ArticleId IdType="pubmed">18971431</ArticleId></ArticleIdList></Reference><Reference><Citation>Proteomics. 2007 Jun;7(13):2258-74</Citation><ArticleIdList><ArticleId IdType="pubmed">17533644</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2014 Jan 14;111(2):845-50</Citation><ArticleIdList><ArticleId IdType="pubmed">24379366</ArticleId></ArticleIdList></Reference><Reference><Citation>FEBS Lett. 2004 Apr 23;564(1-2):183-7</Citation><ArticleIdList><ArticleId IdType="pubmed">15094064</ArticleId></ArticleIdList></Reference><Reference><Citation>J Proteome Res. 2011 Nov 4;10(11):5047-58</Citation><ArticleIdList><ArticleId IdType="pubmed">21905751</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2016 Dec 15;44(22):11033</Citation><ArticleIdList><ArticleId IdType="pubmed">27683222</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 2006 Sep 15;313(5793):1596-604</Citation><ArticleIdList><ArticleId IdType="pubmed">16973872</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Plant Biol. 2012 Dec 29;12:245</Citation><ArticleIdList><ArticleId IdType="pubmed">23272737</ArticleId></ArticleIdList></Reference><Reference><Citation>Tree Physiol. 2017 Dec 1;37(12 ):1752-1766</Citation><ArticleIdList><ArticleId IdType="pubmed">28985382</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Plant. 2015 Jan;8(1):176-87</Citation><ArticleIdList><ArticleId IdType="pubmed">25578281</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Biotechnol. 1999 Aug;17(8):808-12</Citation><ArticleIdList><ArticleId IdType="pubmed">10429249</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant J. 2007 Dec;52(6):1181-91</Citation><ArticleIdList><ArticleId IdType="pubmed">17931352</ArticleId></ArticleIdList></Reference><Reference><Citation>J Proteome Res. 2008 Feb;7(2):731-40</Citation><ArticleIdList><ArticleId IdType="pubmed">18183947</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell. 2009 Apr;21(4):1212-29</Citation><ArticleIdList><ArticleId IdType="pubmed">19376937</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2013 Oct 24;8(10):e76575</Citation><ArticleIdList><ArticleId IdType="pubmed">24204640</ArticleId></ArticleIdList></Reference><Reference><Citation>J Exp Bot. 2015 Jun;66(11):3141-50</Citation><ArticleIdList><ArticleId IdType="pubmed">25796085</ArticleId></ArticleIdList></Reference><Reference><Citation>New Phytol. 2009 Jun;182(4):878-90</Citation><ArticleIdList><ArticleId IdType="pubmed">19291008</ArticleId></ArticleIdList></Reference><Reference><Citation>Protoplasma. 2012 Apr;249(2):269-83</Citation><ArticleIdList><ArticleId IdType="pubmed">21633931</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Plant Biol. 2004 Aug 18;4:14</Citation><ArticleIdList><ArticleId IdType="pubmed">15317655</ArticleId></ArticleIdList></Reference><Reference><Citation>Curr Biol. 2012 Jul 10;22(13):1207-12</Citation><ArticleIdList><ArticleId IdType="pubmed">22704988</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Biol. 2014;15(12):550</Citation><ArticleIdList><ArticleId IdType="pubmed">25516281</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>Norvège</li><li>Suède</li></country></list><tree><country name="Suède"><noRegion><name sortKey="Obudulu, Ogonna" sort="Obudulu, Ogonna" uniqKey="Obudulu O" first="Ogonna" last="Obudulu">Ogonna Obudulu</name></noRegion><name sortKey="Abreu, Ilka N" sort="Abreu, Ilka N" uniqKey="Abreu I" first="Ilka N" last="Abreu">Ilka N. Abreu</name><name sortKey="Ahnlund, Maria" sort="Ahnlund, Maria" uniqKey="Ahnlund M" first="Maria" last="Ahnlund">Maria Ahnlund</name><name sortKey="Bygdell, Joakim" sort="Bygdell, Joakim" uniqKey="Bygdell J" first="Joakim" last="Bygdell">Joakim Bygdell</name><name sortKey="Bygdell, Joakim" sort="Bygdell, Joakim" uniqKey="Bygdell J" first="Joakim" last="Bygdell">Joakim Bygdell</name><name sortKey="Hvidsten, Torgeir R" sort="Hvidsten, Torgeir R" uniqKey="Hvidsten T" first="Torgeir R" last="Hvidsten">Torgeir R. Hvidsten</name><name sortKey="Jonsson, Leif J" sort="Jonsson, Leif J" uniqKey="Jonsson L" first="Leif J" last="Jönsson">Leif J. Jönsson</name><name sortKey="Latha Gandla, Madhavi" sort="Latha Gandla, Madhavi" uniqKey="Latha Gandla M" first="Madhavi" last="Latha Gandla">Madhavi Latha Gandla</name><name sortKey="M Hler, Niklas" sort="M Hler, Niklas" uniqKey="M Hler N" first="Niklas" last="M Hler">Niklas M Hler</name><name sortKey="Moritz, Thomas" sort="Moritz, Thomas" uniqKey="Moritz T" first="Thomas" last="Moritz">Thomas Moritz</name><name sortKey="Obudulu, Ogonna" sort="Obudulu, Ogonna" uniqKey="Obudulu O" first="Ogonna" last="Obudulu">Ogonna Obudulu</name><name sortKey="Obudulu, Ogonna" sort="Obudulu, Ogonna" uniqKey="Obudulu O" first="Ogonna" last="Obudulu">Ogonna Obudulu</name><name sortKey="Petterle, Anna" sort="Petterle, Anna" uniqKey="Petterle A" first="Anna" last="Petterle">Anna Petterle</name><name sortKey="Skotare, Tomas" sort="Skotare, Tomas" uniqKey="Skotare T" first="Tomas" last="Skotare">Tomas Skotare</name><name sortKey="Skotare, Tomas" sort="Skotare, Tomas" uniqKey="Skotare T" first="Tomas" last="Skotare">Tomas Skotare</name><name sortKey="Trygg, Johan" sort="Trygg, Johan" uniqKey="Trygg J" first="Johan" last="Trygg">Johan Trygg</name><name sortKey="Trygg, Johan" sort="Trygg, Johan" uniqKey="Trygg J" first="Johan" last="Trygg">Johan Trygg</name><name sortKey="Tuominen, Hannele" sort="Tuominen, Hannele" uniqKey="Tuominen H" first="Hannele" last="Tuominen">Hannele Tuominen</name><name sortKey="Wingsle, Gunnar" sort="Wingsle, Gunnar" uniqKey="Wingsle G" first="Gunnar" last="Wingsle">Gunnar Wingsle</name></country><country name="Norvège"><noRegion><name sortKey="M Hler, Niklas" sort="M Hler, Niklas" uniqKey="M Hler N" first="Niklas" last="M Hler">Niklas M Hler</name></noRegion><name sortKey="Hvidsten, Torgeir R" sort="Hvidsten, Torgeir R" uniqKey="Hvidsten T" first="Torgeir R" last="Hvidsten">Torgeir R. Hvidsten</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/PoplarV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 001075 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 001075 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Bois
|area= PoplarV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:29298676
|texte= A multi-omics approach reveals function of Secretory Carrier-Associated Membrane Proteins in wood formation of Populus trees.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:29298676" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a PoplarV1
| This area was generated with Dilib version V0.6.37. |  |